The METIS seminar series aims to raise awareness of MET infrastructure and foster open discussions between users (researchers) and infrastructure and core-service providers. Our goal is to create a stage where each infrastructure platform/unit can introduce their infrastructure and the research services they offer.
Following these introductions, we will delve into case studies – stories from research groups – highlighting how the given infrastructure/service was utilized in their research endeavours. At the end of each session, we encourage feedback and discussion, providing everyone with an opportunity to voice their opinions on what works well and what could be improved in MET infrastructure and service delivery. You can give feedback also beforehand (See QR code).
Answer the feedback questionnaire
For more information, visit the Faculty of Medicine and Health Technology’s research infrastructures page.
All are warmly welcome!
Unit presenting:
Genomics and Biomedical Informatics
Time: 12 November 10:00–11:45
Venue: A210+A211
Programme:
- 10:00–10:05 Keijo Viiri: Opening words
- 10:05–10:20 Heini Kallio: “Genomic core services”
- 10:20–10:35 Vidal Fey: “Biomedical Informatics Services”
Case studies and user experiences
- 10:35–10:45 Mauro Scaravilli: Analysis of size distribution and integrity of RNA samples with Agilent Fragment Analyzer and Tape Station
- 10:45–10:55 Minna-Liisa Änkö: MiSeq for targeted sequencing of structured RNAs
- 10:55–11:05 Emilia Siukola: Spatial Transcriptomics of Celiac Disease Small Intestine using GeoMx DS
- 11:05–11:15 Antti Kiviaho: High-throughput spatial transcriptomics from fresh-frozen prostate tissue using 10X Genomics Visium assays
- 11:15–11:25 Mikael Marttinen: Scalable ultra-high-throughput single-cell genomics with 10X Chromium
- 11:25 – 11:45 Feedback and discussion
Lisätietoja
keijo.viiri@tuni.fi